Detailed information of SNP:
|
SNP ID:
sf0810406613(Gbrowse)
Chromosome: chr08 Position: 10406613 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1187 | 86.77% | 13.23% |
| All Indica | 694 | 87.90% | 12.10% |
| All Japonica | 408 | 91.91% | 8.09% |
| Aus | 49 | 36.73% | 63.27% |
| Indica I | 326 | 91.10% | 8.90% |
| Indica II | 181 | 82.87% | 17.13% |
| Indica Intermediate | 187 | 87.17% | 12.83% |
| Temperate Japonica | 306 | 93.46% | 6.54% |
| Tropical Japonica | 55 | 81.82% | 18.18% |
| Japonica Intermediate | 47 | 93.62% | 6.38% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 32 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810406613 | T->C | INTERGENIC | None |