Detailed information of SNP:
|
SNP ID:
sf0810424670(Gbrowse)
Chromosome: chr08 Position: 10424670 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1297 | 90.36% | 9.64% |
| All Indica | 705 | 89.36% | 10.64% |
| All Japonica | 482 | 95.85% | 4.15% |
| Aus | 63 | 57.14% | 42.86% |
| Indica I | 332 | 88.86% | 11.14% |
| Indica II | 189 | 92.06% | 7.94% |
| Indica Intermediate | 184 | 87.50% | 12.50% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 82.14% | 17.86% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 35 | 91.43% | 8.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810424670 | C->A | LOC_Os08g17020(LOC_Os08g17020.1) | Non-Synonymous SNP |