Detailed information of SNP:
|
SNP ID:
sf0810438229(Gbrowse)
Chromosome: chr08 Position: 10438229 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 95.95% | 4.05% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 489 | 90.18% | 9.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 327 | 86.54% | 13.46% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810438229 | G->A | LOC_Os08g17040(LOC_Os08g17040.1) | INTRON |