Detailed information of SNP:
|
SNP ID:
sf0810438843(Gbrowse)
Chromosome: chr08 Position: 10438843 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.36% | 40.64% |
| All Indica | 799 | 90.49% | 9.51% |
| All Japonica | 493 | 5.68% | 94.32% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 3.59% | 96.41% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 67 | 13.43% | 86.57% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810438843 | C->T | LOC_Os08g17040(LOC_Os08g17040.1) | INTRON |