Detailed information of SNP:
|
SNP ID:
sf0810458513(Gbrowse)
Chromosome: chr08 Position: 10458513 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 73.37% | 26.63% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 494 | 32.79% | 67.21% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 333 | 13.21% | 86.79% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810458513 | T->C | LOC_Os08g17090(LOC_Os08g17090.1) | INTRON |