Detailed information of SNP:
|
SNP ID:
sf0810478078(Gbrowse)
Chromosome: chr08 Position: 10478078 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 92.25% | 7.75% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 488 | 81.97% | 18.03% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 90 | 34.44% | 65.56% |
| Japonica Intermediate | 65 | 60.00% | 40.00% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810478078 | G->A | LOC_Os08g17120(LOC_Os08g17120.1) | INTRON |