Detailed information of SNP:
|
SNP ID:
sf0810505622(Gbrowse)
Chromosome: chr08 Position: 10505622 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 81.66% | 18.34% |
| All Indica | 797 | 91.84% | 8.16% |
| All Japonica | 495 | 66.26% | 33.74% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 211 | 86.26% | 13.74% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 85.67% | 14.33% |
| Tropical Japonica | 93 | 13.98% | 86.02% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810505622 | T->C | INTERGENIC | None |