Detailed information of SNP:
|
SNP ID:
sf0810506149(Gbrowse)
Chromosome: chr08 Position: 10506149 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1334 | 77.96% | 22.04% |
| All Indica | 722 | 80.19% | 19.81% |
| All Japonica | 492 | 84.96% | 15.04% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 354 | 90.96% | 9.04% |
| Indica II | 178 | 55.06% | 44.94% |
| Indica Intermediate | 190 | 83.68% | 16.32% |
| Temperate Japonica | 334 | 85.93% | 14.07% |
| Tropical Japonica | 93 | 80.65% | 19.35% |
| Japonica Intermediate | 65 | 86.15% | 13.85% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 69.23% | 30.77% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810506149 | A->G | INTERGENIC | None |