Detailed information of SNP:
|
SNP ID:
sf0810518364(Gbrowse)
Chromosome: chr08 Position: 10518364 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1346 | 76.82% | 23.18% |
| All Indica | 736 | 63.18% | 36.82% |
| All Japonica | 491 | 94.09% | 5.91% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 338 | 54.44% | 45.56% |
| Indica II | 202 | 80.69% | 19.31% |
| Indica Intermediate | 196 | 60.20% | 39.80% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 89 | 75.28% | 24.72% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 84.21% | 15.79% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810518364 | T->A | LOC_Os08g17170(LOC_Os08g17170.1) | INTRON |