Detailed information of SNP:
|
SNP ID:
sf0810528890(Gbrowse)
Chromosome: chr08 Position: 10528890 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 97.39% | 2.61% |
| All Indica | 740 | 96.62% | 3.38% |
| All Japonica | 487 | 98.97% | 1.03% |
| Aus | 61 | 95.08% | 4.92% |
| Indica I | 338 | 95.86% | 4.14% |
| Indica II | 199 | 95.98% | 4.02% |
| Indica Intermediate | 203 | 98.52% | 1.48% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810528890 | C->T | INTERGENIC | None |