Detailed information of SNP:
|
SNP ID:
sf0810664704(Gbrowse)
Chromosome: chr08 Position: 10664704 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 87.81% | 12.19% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 88.53% | 11.47% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 82.63% | 17.37% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 88.06% | 11.94% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810664704 | A->G | INTERGENIC | None |