Detailed information of SNP:
|
SNP ID:
sf0810681230(Gbrowse)
Chromosome: chr08 Position: 10681230 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 91.45% | 8.55% |
| All Indica | 789 | 95.94% | 4.06% |
| All Japonica | 493 | 89.25% | 10.75% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 203 | 87.19% | 12.81% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 333 | 88.59% | 11.41% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810681230 | T->G | INTERGENIC | None |