Detailed information of SNP:
|
SNP ID:
sf0810681746(Gbrowse)
Chromosome: chr08 Position: 10681746 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 90.84% | 9.16% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 89.54% | 10.46% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 83.57% | 16.43% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 88.96% | 11.04% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810681746 | T->C | INTERGENIC | None |