Detailed information of SNP:
|
SNP ID:
sf0810685578(Gbrowse)
Chromosome: chr08 Position: 10685578 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1262 | 72.11% | 27.89% |
| All Indica | 767 | 96.35% | 3.65% |
| All Japonica | 393 | 20.61% | 79.39% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 359 | 94.71% | 5.29% |
| Indica II | 208 | 98.56% | 1.44% |
| Indica Intermediate | 200 | 97.00% | 3.00% |
| Temperate Japonica | 327 | 14.68% | 85.32% |
| Tropical Japonica | 29 | 72.41% | 27.59% |
| Japonica Intermediate | 37 | 32.43% | 67.57% |
| Group VI/Aromatic | 2 | 100.00% | 0.00% |
| Intermediate | 33 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810685578 | C->T | INTERGENIC | None |