Detailed information of SNP:
|
SNP ID:
sf0810747567(Gbrowse)
Chromosome: chr08 Position: 10747567 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 89.01% | 10.99% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 87.76% | 12.24% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810747567 | A->G | LOC_Os08g17570(LOC_Os08g17570.1) | INTRON |