Detailed information of SNP:
|
SNP ID:
sf0810754460(Gbrowse)
Chromosome: chr08 Position: 10754460 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 93.50% | 6.50% |
| All Indica | 796 | 89.20% | 10.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 87.97% | 12.03% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 210 | 91.43% | 8.57% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810754460 | C->T | INTERGENIC | None |