Detailed information of SNP:
|
SNP ID:
sf0810806392(Gbrowse)
Chromosome: chr08 Position: 10806392 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 51.97% | 48.03% |
| All Indica | 799 | 88.74% | 11.26% |
| All Japonica | 497 | 1.81% | 98.19% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 75.12% | 24.88% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810806392 | G->A | LOC_Os08g17670(LOC_Os08g17670.1) | INTRON |