Detailed information of SNP:
|
SNP ID:
sf0810824528(Gbrowse)
Chromosome: chr08 Position: 10824528 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 94.59% | 5.41% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 467 | 86.72% | 13.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 77 | 46.75% | 53.25% |
| Japonica Intermediate | 56 | 71.43% | 28.57% |
| Group VI/Aromatic | 12 | 50.00% | 50.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810824528 | G->T | LOC_Os08g17690(LOC_Os08g17690.1) | Non-Synonymous SNP |