Detailed information of SNP:
|
SNP ID:
sf0810830302(Gbrowse)
Chromosome: chr08 Position: 10830302 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1350 | 56.96% | 43.04% |
| All Indica | 733 | 86.77% | 13.23% |
| All Japonica | 496 | 16.33% | 83.67% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 339 | 82.89% | 17.11% |
| Indica II | 195 | 88.72% | 11.28% |
| Indica Intermediate | 199 | 91.46% | 8.54% |
| Temperate Japonica | 335 | 15.22% | 84.78% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810830302 | G->A | INTERGENIC | None |