Detailed information of SNP:
|
SNP ID:
sf0810832100(Gbrowse)
Chromosome: chr08 Position: 10832100 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 93.12% | 6.88% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 487 | 83.78% | 16.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 87 | 41.38% | 58.62% |
| Japonica Intermediate | 66 | 65.15% | 34.85% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810832100 | A->T | LOC_Os08g17700(LOC_Os08g17700.1) | Non-Synonymous SNP |