Detailed information of SNP:
|
SNP ID:
sf0810846744(Gbrowse)
Chromosome: chr08 Position: 10846744 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 87.10% | 12.90% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 497 | 75.45% | 24.55% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810846744 | G->A | LOC_Os08g17740(LOC_Os08g17740.1) | Synonymous |