Detailed information of SNP:



SNP ID: sf0810846744(Gbrowse)

Chromosome: chr08

Position: 10846744
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 87.10% 12.90%
All Indica799 99.25% 0.75%
All Japonica497 75.45% 24.55%
Aus67 61.19% 38.81%
Indica I375 100.00% 0.00%
Indica II213 98.12% 1.88%
Indica Intermediate211 99.05% 0.95%
Temperate Japonica335 95.82% 4.18%
Tropical Japonica94 20.21% 79.79%
Japonica Intermediate68 51.47% 48.53%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 59.52% 40.48%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0810846744 G->A LOC_Os08g17740(LOC_Os08g17740.1) Synonymous