Detailed information of SNP:
|
SNP ID:
sf0810857589(Gbrowse)
Chromosome: chr08 Position: 10857589 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 96.62% | 3.38% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 478 | 91.42% | 8.58% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 80 | 67.50% | 32.50% |
| Japonica Intermediate | 65 | 78.46% | 21.54% |
| Group VI/Aromatic | 9 | 66.67% | 33.33% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810857589 | C->T | INTERGENIC | None |