Detailed information of SNP:
|
SNP ID:
sf0810857984(Gbrowse)
Chromosome: chr08 Position: 10857984 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 97.01% | 2.99% |
| All Indica | 798 | 99.12% | 0.88% |
| All Japonica | 485 | 92.78% | 7.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 91.82% | 8.18% |
| Tropical Japonica | 87 | 93.10% | 6.90% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810857984 | C->T | INTERGENIC | None |