Detailed information of SNP:
|
SNP ID:
sf0810859594(Gbrowse)
Chromosome: chr08 Position: 10859594 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 89.35% | 10.65% |
| All Indica | 793 | 97.10% | 2.90% |
| All Japonica | 495 | 77.98% | 22.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 95.51% | 4.49% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810859594 | C->T | LOC_Os08g17750(LOC_Os08g17750.1) | Non-Synonymous SNP |