Detailed information of SNP:
|
SNP ID:
sf0810860356(Gbrowse)
Chromosome: chr08 Position: 10860356 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1306 | 71.59% | 28.41% |
| All Indica | 793 | 95.21% | 4.79% |
| All Japonica | 410 | 22.20% | 77.80% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 207 | 95.17% | 4.83% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 330 | 15.45% | 84.55% |
| Tropical Japonica | 37 | 67.57% | 32.43% |
| Japonica Intermediate | 43 | 34.88% | 65.12% |
| Group VI/Aromatic | 2 | 50.00% | 50.00% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810860356 | A->G | LOC_Os08g17750(LOC_Os08g17750.1) | Non-Synonymous SNP |