Detailed information of SNP:
|
SNP ID:
sf0810863392(Gbrowse)
Chromosome: chr08 Position: 10863392 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 55.48% | 44.52% |
| All Indica | 793 | 88.65% | 11.35% |
| All Japonica | 497 | 5.63% | 94.37% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 371 | 91.37% | 8.63% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810863392 | G->A | LOC_Os08g17750(LOC_Os08g17750.1) | Non-Synonymous SNP |