Detailed information of SNP:
|
SNP ID:
sf0810863587(Gbrowse)
Chromosome: chr08 Position: 10863587 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 61.14% | 38.86% |
| All Indica | 798 | 91.35% | 8.65% |
| All Japonica | 497 | 16.70% | 83.30% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 91.04% | 8.96% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 14.93% | 85.07% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810863587 | C->T | LOC_Os08g17750(LOC_Os08g17750.1) | INTRON |