Detailed information of SNP:
|
SNP ID:
sf0810880072(Gbrowse)
Chromosome: chr08 Position: 10880072 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 67.66% | 32.34% |
| All Indica | 789 | 98.10% | 1.90% |
| All Japonica | 497 | 17.51% | 82.49% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 373 | 97.59% | 2.41% |
| Indica II | 205 | 98.54% | 1.46% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 15.52% | 84.48% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810880072 | A->G | INTERGENIC | None |