Detailed information of SNP:
|
SNP ID:
sf0810898169(Gbrowse)
Chromosome: chr08 Position: 10898169 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.14% | 2.86% |
| All Indica | 791 | 96.59% | 3.41% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 59 | 83.05% | 16.95% |
| Indica I | 372 | 98.12% | 1.88% |
| Indica II | 209 | 96.65% | 3.35% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810898169 | A->T | INTERGENIC | None |