Detailed information of SNP:
|
SNP ID:
sf0810919356(Gbrowse)
Chromosome: chr08 Position: 10919356 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1406 | 73.19% | 26.81% |
| All Indica | 787 | 93.01% | 6.99% |
| All Japonica | 496 | 37.30% | 62.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 93.73% | 6.27% |
| Indica II | 210 | 90.95% | 9.05% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 17.01% | 82.99% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810919356 | A->G | LOC_Os08g17810(LOC_Os08g17810.1) | Non-Synonymous SNP |