Detailed information of SNP:
|
SNP ID:
sf0810920876(Gbrowse)
Chromosome: chr08 Position: 10920876 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 64.21% | 35.79% |
| All Indica | 795 | 92.08% | 7.92% |
| All Japonica | 497 | 26.16% | 73.84% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 213 | 86.85% | 13.15% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810920876 | T->C | INTERGENIC | None |