Detailed information of SNP:
|
SNP ID:
sf0810947658(Gbrowse)
Chromosome: chr08 Position: 10947658 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1353 | 54.32% | 45.68% |
| All Indica | 742 | 42.18% | 57.82% |
| All Japonica | 490 | 77.35% | 22.65% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 342 | 40.94% | 59.06% |
| Indica II | 203 | 43.84% | 56.16% |
| Indica Intermediate | 197 | 42.64% | 57.36% |
| Temperate Japonica | 334 | 95.81% | 4.19% |
| Tropical Japonica | 92 | 30.43% | 69.57% |
| Japonica Intermediate | 64 | 48.44% | 51.56% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810947658 | G->A | INTERGENIC | None |