Detailed information of SNP:
|
SNP ID:
sf0810980953(Gbrowse)
Chromosome: chr08 Position: 10980953 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 93.12% | 6.88% |
| All Indica | 737 | 88.60% | 11.40% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 341 | 86.51% | 13.49% |
| Indica II | 199 | 91.46% | 8.54% |
| Indica Intermediate | 197 | 89.34% | 10.66% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0810980953 | A->G | LOC_Os08g17890(LOC_Os08g17890.1) | Synonymous |