Detailed information of SNP:
|
SNP ID:
sf0811005858(Gbrowse)
Chromosome: chr08 Position: 11005858 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 82.33% | 17.67% |
| All Indica | 780 | 88.21% | 11.79% |
| All Japonica | 496 | 74.80% | 25.20% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 204 | 90.69% | 9.31% |
| Indica Intermediate | 207 | 84.06% | 15.94% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811005858 | T->C | INTERGENIC | None |