Detailed information of SNP:
|
SNP ID:
sf0811005890(Gbrowse)
Chromosome: chr08 Position: 11005890 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1364 | 89.59% | 10.41% |
| All Indica | 754 | 83.95% | 16.05% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 61 | 73.77% | 26.23% |
| Indica I | 355 | 80.56% | 19.44% |
| Indica II | 195 | 88.21% | 11.79% |
| Indica Intermediate | 204 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811005890 | C->T | INTERGENIC | None |