Detailed information of SNP:
|
SNP ID:
sf0811119489(Gbrowse)
Chromosome: chr08 Position: 11119489 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 66.79% | 33.21% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 481 | 30.15% | 69.85% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 211 | 81.52% | 18.48% |
| Indica Intermediate | 208 | 95.67% | 4.33% |
| Temperate Japonica | 326 | 9.82% | 90.18% |
| Tropical Japonica | 92 | 85.87% | 14.13% |
| Japonica Intermediate | 63 | 53.97% | 46.03% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811119489 | G->A | LOC_Os08g18140(LOC_Os08g18140.1) | INTRON |