Detailed information of SNP:



SNP ID: sf0811119489(Gbrowse)

Chromosome: chr08

Position: 11119489
Major allele: A

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1391 66.79% 33.21%
All Indica792 93.06% 6.94%
All Japonica481 30.15% 69.85%
Aus65 10.77% 89.23%
Indica I373 98.12% 1.88%
Indica II211 81.52% 18.48%
Indica Intermediate208 95.67% 4.33%
Temperate Japonica326 9.82% 90.18%
Tropical Japonica92 85.87% 14.13%
Japonica Intermediate63 53.97% 46.03%
Group VI/Aromatic13 84.62% 15.38%
Intermediate40 72.50% 27.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0811119489 G->A LOC_Os08g18140(LOC_Os08g18140.1) INTRON