Detailed information of SNP:
|
SNP ID:
sf0811280861(Gbrowse)
Chromosome: chr08 Position: 11280861 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 92.62% | 7.38% |
| All Japonica | 497 | 5.43% | 94.57% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811280861 | G->A | INTERGENIC | None |