Detailed information of SNP:
|
SNP ID:
sf0811307454(Gbrowse)
Chromosome: chr08 Position: 11307454 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.00% | 33.00% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 10.89% | 89.11% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 5.07% | 94.93% |
| Tropical Japonica | 93 | 27.96% | 72.04% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811307454 | T->C | INTERGENIC | None |