Detailed information of SNP:
|
SNP ID:
sf0811354402(Gbrowse)
Chromosome: chr08 Position: 11354402 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 58.60% | 41.40% |
| All Indica | 763 | 88.99% | 11.01% |
| All Japonica | 490 | 7.55% | 92.45% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 361 | 93.07% | 6.93% |
| Indica II | 205 | 82.93% | 17.07% |
| Indica Intermediate | 197 | 87.82% | 12.18% |
| Temperate Japonica | 335 | 3.88% | 96.12% |
| Tropical Japonica | 87 | 16.09% | 83.91% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 58.97% | 41.03% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811354402 | T->C | INTERGENIC | None |