Detailed information of SNP:
|
SNP ID:
sf0811403388(Gbrowse)
Chromosome: chr08 Position: 11403388 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1252 | 93.85% | 6.15% |
| All Indica | 661 | 92.28% | 7.72% |
| All Japonica | 472 | 94.92% | 5.08% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 303 | 90.10% | 9.90% |
| Indica II | 190 | 98.42% | 1.58% |
| Indica Intermediate | 168 | 89.29% | 10.71% |
| Temperate Japonica | 324 | 99.38% | 0.62% |
| Tropical Japonica | 86 | 76.74% | 23.26% |
| Japonica Intermediate | 62 | 96.77% | 3.23% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811403388 | C->T | LOC_Os08g19110(LOC_Os08g19110.1) | INTRON |