Detailed information of SNP:
|
SNP ID:
sf0811468688(Gbrowse)
Chromosome: chr08 Position: 11468688 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 84.71% | 15.29% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 208 | 92.31% | 7.69% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811468688 | C->A | INTERGENIC | None |