Detailed information of SNP:
|
SNP ID:
sf0811474243(Gbrowse)
Chromosome: chr08 Position: 11474243 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 90.09% | 9.91% |
| All Indica | 790 | 96.08% | 3.92% |
| All Japonica | 443 | 78.78% | 21.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 207 | 92.75% | 7.25% |
| Temperate Japonica | 331 | 87.61% | 12.39% |
| Tropical Japonica | 58 | 39.66% | 60.34% |
| Japonica Intermediate | 54 | 66.67% | 33.33% |
| Group VI/Aromatic | 7 | 42.86% | 57.14% |
| Intermediate | 35 | 88.57% | 11.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811474243 | G->A | INTERGENIC | None |