Detailed information of SNP:
|
SNP ID:
sf0811475586(Gbrowse)
Chromosome: chr08 Position: 11475586 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1255 | 89.88% | 10.12% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 336 | 63.10% | 36.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 189 | 40.21% | 59.79% |
| Tropical Japonica | 91 | 98.90% | 1.10% |
| Japonica Intermediate | 56 | 82.14% | 17.86% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811475586 | C->G | INTERGENIC | None |