Detailed information of SNP:
|
SNP ID:
sf0811481292(Gbrowse)
Chromosome: chr08 Position: 11481292 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 92.63% | 7.37% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 383 | 75.20% | 24.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 231 | 63.20% | 36.80% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 60 | 83.33% | 16.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811481292 | C->T | INTERGENIC | None |