Detailed information of SNP:
|
SNP ID:
sf0811524019(Gbrowse)
Chromosome: chr08 Position: 11524019 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 93.11% | 6.89% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 487 | 84.19% | 15.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 89 | 46.07% | 53.93% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811524019 | G->A | INTERGENIC | None |