Detailed information of SNP:
|
SNP ID:
sf0811524481(Gbrowse)
Chromosome: chr08 Position: 11524481 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1372 | 90.89% | 9.11% |
| All Indica | 784 | 96.68% | 3.32% |
| All Japonica | 469 | 81.66% | 18.34% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 98.38% | 1.62% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 332 | 87.95% | 12.05% |
| Tropical Japonica | 74 | 64.86% | 35.14% |
| Japonica Intermediate | 63 | 68.25% | 31.75% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811524481 | C->A | INTERGENIC | None |