Detailed information of SNP:
|
SNP ID:
sf0811612664(Gbrowse)
Chromosome: chr08 Position: 11612664 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 88.68% | 11.32% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 492 | 73.37% | 26.63% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 86.57% | 13.43% |
| Tropical Japonica | 92 | 38.04% | 61.96% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811612664 | C->T | LOC_Os08g19440(LOC_Os08g19440.1) | Non-Synonymous SNP |