Detailed information of SNP:
|
SNP ID:
sf0811627037(Gbrowse)
Chromosome: chr08 Position: 11627037 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 50.15% | 49.85% |
| All Indica | 751 | 80.16% | 19.84% |
| All Japonica | 495 | 1.21% | 98.79% |
| Aus | 60 | 91.67% | 8.33% |
| Indica I | 347 | 83.57% | 16.43% |
| Indica II | 205 | 72.68% | 27.32% |
| Indica Intermediate | 199 | 81.91% | 18.09% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811627037 | T->C | INTERGENIC | None |