Detailed information of SNP:
|
SNP ID:
sf0811645987(Gbrowse)
Chromosome: chr08 Position: 11645987 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.32% | 49.68% |
| All Indica | 796 | 85.55% | 14.45% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 375 | 90.13% | 9.87% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 209 | 85.17% | 14.83% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811645987 | C->T | INTERGENIC | None |