Detailed information of SNP:
|
SNP ID:
sf0811699885(Gbrowse)
Chromosome: chr08 Position: 11699885 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 80.47% | 19.53% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 481 | 45.53% | 54.47% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 326 | 27.30% | 72.70% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 64 | 65.62% | 34.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0811699885 | A->G | INTERGENIC | None |